Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs11525712 chr2:99821528 T/C 4.15E-8 514 6.83 19.27 22.27 KM Plot
HNSC rs115312977 chr1:35794177 G/T 9.37E-14 508 21.23 33.1 3.02 KM Plot
HNSC rs116324086 chr1:36287771 A/G 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs116757422 chr1:36349560 G/A 2.52E-11 514 21.27 32.67 3.73 KM Plot
HNSC rs1168658 chr12:122338566 C/T 3.61E-5 515 22.23 23.62 14.88 KM Plot
HNSC rs116888171 chr21:48081490 T/C 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs117007319 chr21:48065335 G/A 3.74E-9 513 21.52 21.92 2.73 KM Plot
HNSC rs117443865 chr21:47959731 C/G 3.6E-8 513 21.33 22.78 2.87 KM Plot
HNSC rs117447639 chr21:48086527 G/A 5.16E-9 511 21.52 21.02 2.73 KM Plot
HNSC rs117530130 chr21:48075976 A/G 4.71E-9 513 21.52 21.02 2.73 KM Plot
HNSC rs117610848 chr21:48074024 G/A 4.71E-9 513 21.52 21.02 2.73 KM Plot
HNSC rs117772343 chr21:48075336 T/G 4.26E-9 512 21.52 21.5 2.73 KM Plot
HNSC rs117817503 chr21:47729335 C/A 2.05E-14 506 21.37 23.37 3.02 KM Plot
HNSC rs11801360 chr1:36170724 A/G 9.1E-15 509 21.37 27.43 3.02 KM Plot
HNSC rs118032579 chr21:48085140 G/A 5.16E-9 511 21.52 21.02 2.73 KM Plot